chr3:33051766:T>C Detail (hg38) (GLB1)

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Summary
Information
Links
Disease area statistics
MGeND
ClinVar
CIViC
DisGeNET
Annotation
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Information

Genome

Assembly	Position
hg19	chr3:33,093,258-33,093,258 View the variant detail on this assembly version.
hg38	chr3:33,051,766-33,051,766

HGVS

GLB1

Type	Transcript	Protein
RefSeq	NM_000404.3:c.947A>G	NP_000395.2:p.Tyr316Cys
	NM_001317040.1:c.947A>G	NP_001303969.1:p.Tyr316Cys
	NM_001135602.2:c.554A>G	NP_001129074.1:p.Tyr185Cys
	NM_001079811.2:c.857A>G	NP_001073279.1:p.Tyr286Cys
Ensemble	ENST00000307363.10:c.947A>G	ENST00000307363.10:p.Tyr316Cys
	ENST00000307377.12:c.554A>G	ENST00000307377.12:p.Tyr185Cys
	ENST00000399402.7:c.857A>G	ENST00000399402.7:p.Tyr286Cys

Summary

MGeND

Clinical significance	Pathogenic
Variant entry	1
GWAS entry
Disease area statistics	Show details

Frequency

[No Data.]

Prediction

ClinVar

Clinical Significance	Likely pathogenic
Review star
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Links

GLB1

Type	Database	ID	Link
Gene	MIM	611458	OMIM
	HGNC	4298	HGNC
	Ensembl	ENSG00000170266	Ensembl
	NCBI		NCBI
	Gene Cards		Gene Cards
	OncoKB		OncoKB

Type	Database	ID	Link
Variant	TogoVar	tgv11982547	TogoVar
	COSMIC
	MONDO

Disease area statistics

MGeND

Clinical significance	Last evaluated	Condition	Origin	Submission ID	Submitter	Institute	Citation	Comment	Image
Pathogenic		other	germline	MGS000001 (TMGS000137)	Kenjiro Kosaki	Keio University

ClinVar

Clinical significance	Last evaluated	Review status	Condition	Origin	Links
Pathogenic	1992-05-01	no assertion criteria provided	Infantile GM1 gangliosidosis	germline	Detail
Likely pathogenic	2018-03-12	criteria provided, single submitter	Mucopolysaccharidosis, MPS-IV-B,GM1 gangliosidosis type 3,Infantile GM1 gangliosidosis,GM1 gangliosidosis type 2	unknown	Detail
Likely pathogenic	2018-03-12	criteria provided, single submitter	Mucopolysaccharidosis, MPS-IV-B,GM1 gangliosidosis type 3,Infantile GM1 gangliosidosis,GM1 gangliosidosis type 2	unknown	Detail
Likely pathogenic	2018-03-12	criteria provided, single submitter	Mucopolysaccharidosis, MPS-IV-B,GM1 gangliosidosis type 3,Infantile GM1 gangliosidosis,GM1 gangliosidosis type 2	unknown	Detail
Likely pathogenic	2018-03-12	criteria provided, single submitter	Mucopolysaccharidosis, MPS-IV-B,GM1 gangliosidosis type 3,Infantile GM1 gangliosidosis,GM1 gangliosidosis type 2	unknown	Detail

CIViC

[No Data.]

DisGeNET

Score	Disease name	Description	Source	Pubmed	Links
0.362	Gangliosidosis, Generalized GM1, Type 1 (disorder)	NA	CLINVAR		Detail

Annotation

Annotations

Descrption	Source	Links
NM_000404.4(GLB1):c.947A>G (p.Tyr316Cys) AND Infantile GM1 gangliosidosis	ClinVar	Detail
NM_000404.4(GLB1):c.947A>G (p.Tyr316Cys) AND multiple conditions	ClinVar	Detail
NM_000404.4(GLB1):c.947A>G (p.Tyr316Cys) AND multiple conditions	ClinVar	Detail
NM_000404.4(GLB1):c.947A>G (p.Tyr316Cys) AND multiple conditions	ClinVar	Detail
NM_000404.4(GLB1):c.947A>G (p.Tyr316Cys) AND multiple conditions	ClinVar	Detail
NA	DisGeNET	Detail

Overlapped Transcript Coordinates

Gene	Transcript ID	Exon Number	Chromosome	Start	Stop	Type	Amino Mutation	Transcript Position	Links

Overlapped Transcript

Gene	Transcript ID	Chromosome	Start	Stop	Links

Gene: -
dbSNP: rs72555361 dbSNP
Genome: hg38
Position: chr3:33,051,766-33,051,766
Variant Type: snv
Reference Allele: T
Alternative Allele: C

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